One of the latest hints we've heard about analyzing your WIP involves copying your whole book on tiny pages so you could color code where the plot turns occur, the character shifts begin and end, the surprise of complications, and how far along in the manuscript certain facts are revealed, etc.
Check out Tim Koch's personal discovery.
A bit of trivia for you: a 90000-word story fits on 15 11x17 pages at 6 point and 6 columns. LOL
He's using LEGER size paper. It's worth having around if you have kids because it's 'poster' size to a 4-5 year old. One ream lasts forever. Tim Koch is the author of two fierce YA novels about young adults running from mind/body control in a futuristic inner/outer space in the universe and the voodoo that teens hoodoo so well. This is a great way to see the energy flow of a whole book.....and it takes only 15 pages. And a place to hang it on the wall or a bulletin board so you can really see it with a bird's eye view.
Don't try to read the fine print, SEE the transitions and hum the rhythm.